Package picard.sam.SamErrorMetric
Enum Class ReadBaseStratification.Consensus
java.lang.Object
java.lang.Enum<ReadBaseStratification.Consensus>
picard.sam.SamErrorMetric.ReadBaseStratification.Consensus
- All Implemented Interfaces:
Serializable
,Comparable<ReadBaseStratification.Consensus>
,Constable
- Enclosing class:
- ReadBaseStratification
Types of consensus reads as determined by the number of duplicates used from
first and second strands.
SIMPLEX_SINGLETON
SIMPLEX_CONSENSUS
DUPLEX_SINGLETON
DUPLEX_CONSENSUS
UNKNOWN
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Nested Class Summary
Nested classes/interfaces inherited from class java.lang.Enum
Enum.EnumDesc<E extends Enum<E>>
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Enum Constant Summary
Enum ConstantsEnum ConstantDescriptionConsensus read which has two or more observations in both directions.Read which has two observations, one from each direction.Read which had multiple observations, but all from the same strand (or the strand could not be determined).Read which only one observation is made.Read whose consensus status cannot be determined. -
Method Summary
Modifier and TypeMethodDescriptionReturns the enum constant of this class with the specified name.static ReadBaseStratification.Consensus[]
values()
Returns an array containing the constants of this enum class, in the order they are declared.
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Enum Constant Details
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SIMPLEX_SINGLETON
Read which only one observation is made. In a sense, these are not consensus reads. -
SIMPLEX_CONSENSUS
Read which had multiple observations, but all from the same strand (or the strand could not be determined). -
DUPLEX_SINGLETON
Read which has two observations, one from each direction. -
DUPLEX_CONSENSUS
Consensus read which has two or more observations in both directions. -
UNKNOWN
Read whose consensus status cannot be determined.
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Method Details
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values
Returns an array containing the constants of this enum class, in the order they are declared.- Returns:
- an array containing the constants of this enum class, in the order they are declared
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valueOf
Returns the enum constant of this class with the specified name. The string must match exactly an identifier used to declare an enum constant in this class. (Extraneous whitespace characters are not permitted.)- Parameters:
name
- the name of the enum constant to be returned.- Returns:
- the enum constant with the specified name
- Throws:
IllegalArgumentException
- if this enum class has no constant with the specified nameNullPointerException
- if the argument is null
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