Enum Class ReadType

java.lang.Object
java.lang.Enum<ReadType>
picard.illumina.parser.ReadType
All Implemented Interfaces:
Serializable, Comparable<ReadType>, Constable

public enum ReadType extends Enum<ReadType>
A read type describes a stretch of cycles in an ReadStructure (e.g. Assume we have a paired end/barcoded run with the 76 template cycles followed by 8 barcode cycles followed by another 76 template reads, the run would be represented by the ReadStructure 76T8B76T) Note: Currently SKIP is unused by IlluminaBasecallsToSam, ExtractIlluminaBarcodes, and IlluminaDataProvider
  • Enum Constant Details

  • Field Details

    • Template

      public static final ReadType Template
    • Barcode

      public static final ReadType Barcode
    • MolecularIndex

      public static final ReadType MolecularIndex
    • Skip

      public static final ReadType Skip
  • Method Details

    • values

      public static ReadType[] values()
      Returns an array containing the constants of this enum class, in the order they are declared.
      Returns:
      an array containing the constants of this enum class, in the order they are declared
    • valueOf

      public static ReadType valueOf(String name)
      Returns the enum constant of this class with the specified name. The string must match exactly an identifier used to declare an enum constant in this class. (Extraneous whitespace characters are not permitted.)
      Parameters:
      name - the name of the enum constant to be returned.
      Returns:
      the enum constant with the specified name
      Throws:
      IllegalArgumentException - if this enum class has no constant with the specified name
      NullPointerException - if the argument is null