Class GenotypeQualityFilter

java.lang.Object
picard.vcf.filter.GenotypeQualityFilter
All Implemented Interfaces:
GenotypeFilter

public class GenotypeQualityFilter extends Object implements GenotypeFilter
Genotype filter that filters out genotypes below a given quality threshold.
  • Constructor Details

    • GenotypeQualityFilter

      public GenotypeQualityFilter(int minGq)
  • Method Details

    • filter

      public String filter(htsjdk.variant.variantcontext.VariantContext ctx, htsjdk.variant.variantcontext.Genotype gt)
      Description copied from interface: GenotypeFilter
      Test whether or not the genotype should be filtered out. If so return a filter string, otherwise return null.
      Specified by:
      filter in interface GenotypeFilter