Package picard.util

Class IntervalListToBed


@DocumentedFeature public class IntervalListToBed extends CommandLineProgram
Trivially simple command line program to convert an IntervalList file to a BED file.
  • Field Details

    • INPUT

      @Argument(shortName="I", doc="Input IntervalList file.") public File INPUT
    • OUTPUT

      @Argument(shortName="O", doc="Output BED file.") public File OUTPUT
    • SCORE

      @Argument(doc="The score, between 0-1000, to output for each interval in the BED file.") public int SCORE
    • SORT

      @Argument(doc="If true, sort the interval list prior to outputting as BED file.") public boolean SORT
  • Constructor Details

    • IntervalListToBed

      public IntervalListToBed()
  • Method Details

    • doWork

      protected int doWork()
      Description copied from class: CommandLineProgram
      Do the work after command line has been parsed. RuntimeException may be thrown by this method, and are reported appropriately.
      Specified by:
      doWork in class CommandLineProgram
      Returns:
      program exit status.