nipype.interfaces.slicer.quantification.changequantification module

Autogenerated file - DO NOT EDIT If you spot a bug, please report it on the mailing list and/or change the generator.

IntensityDifferenceMetric

Link to code

Bases: SEMLikeCommandLine

Wrapped executable: IntensityDifferenceMetric.

title:

Intensity Difference Change Detection (FAST)

category:

Quantification.ChangeQuantification

description:

Quantifies the changes between two spatially aligned images based on the pixel-wise difference of image intensities.

version: 0.1

contributor: Andrey Fedorov

acknowledgements:

argsa string

Additional parameters to the command. Maps to a command-line argument: %s.

baselineSegmentationVolumea pathlike object or string representing an existing file

Label volume that contains segmentation of the structure of interest in the baseline volume. Maps to a command-line argument: %s (position: -3).

baselineVolumea pathlike object or string representing an existing file

Baseline volume to be compared to. Maps to a command-line argument: %s (position: -4).

changingBandSizean integer

How far (in mm) from the boundary of the segmentation should the intensity changes be considered. Maps to a command-line argument: --changingBandSize %d.

environa dictionary with keys which are a bytes or None or a value of class ‘str’ and with values which are a bytes or None or a value of class ‘str’

Environment variables. (Nipype default value: {})

followupVolumea pathlike object or string representing an existing file

Followup volume to be compare to the baseline. Maps to a command-line argument: %s (position: -2).

outputVolumea boolean or a pathlike object or string representing a file

Output volume to keep the results of change quantification. Maps to a command-line argument: %s (position: -1).

reportFileNamea boolean or a pathlike object or string representing a file

Report file name. Maps to a command-line argument: --reportFileName %s.

sensitivityThresholda float

This parameter should be between 0 and 1, and defines how sensitive the metric should be to the intensity changes. Maps to a command-line argument: --sensitivityThreshold %f.

outputVolumea pathlike object or string representing an existing file

Output volume to keep the results of change quantification.

reportFileNamea pathlike object or string representing an existing file

Report file name.