libpappsomspp
Library for mass spectrometry
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tracedetectionmoulon.h
Go to the documentation of this file.
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/*******************************************************************************
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* Copyright (c) 2015 Olivier Langella <Olivier.Langella@moulon.inra.fr>.
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*
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* This file is part of the PAPPSOms++ library.
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*
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* PAPPSOms++ is free software: you can redistribute it and/or modify
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* it under the terms of the GNU General Public License as published by
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* the Free Software Foundation, either version 3 of the License, or
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* (at your option) any later version.
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*
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* PAPPSOms++ is distributed in the hope that it will be useful,
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* but WITHOUT ANY WARRANTY; without even the implied warranty of
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* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
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* GNU General Public License for more details.
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*
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* You should have received a copy of the GNU General Public License
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* along with PAPPSOms++. If not, see <http://www.gnu.org/licenses/>.
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*
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* Contributors:
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* Olivier Langella <Olivier.Langella@moulon.inra.fr> - initial API and
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*implementation
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******************************************************************************/
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#pragma once
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#include "
tracedetectioninterface.h
"
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#include "../../processing/filters/filtermorpho.h"
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namespace
pappso
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{
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class
PMSPP_LIB_DECL
TraceDetectionMoulon
:
public
TraceDetectionInterface
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{
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private
:
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FilterMorphoMean
m_xicFilterSmoothing
;
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pappso_double
m_ticStart
;
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pappso_double
m_ticStop
;
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public
:
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TraceDetectionMoulon
(
unsigned
int
smoothing_half_window_length,
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pappso_double
tic_start,
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pappso_double
tic_stop);
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TraceDetectionMoulon
(
const
TraceDetectionMoulon
&other);
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virtual
~TraceDetectionMoulon
();
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void
setFilterMorphoMean(
const
FilterMorphoMean
&smooth);
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void
setTicStart(
double
tic_start);
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void
setTicStop(
double
tic_stop);
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unsigned
int
getSmoothingHalfEdgeWindows()
const
;
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pappso_double
getTicStart()
const
;
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pappso_double
getTicStop()
const
;
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void
detect(
const
Trace
&xic,
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TraceDetectionSinkInterface
&sink,
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bool
remove_peak_base)
const override
;
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};
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}
// namespace pappso
pappso::FilterMorphoMean
mean filter apply mean of y values inside the window : this results in a kind of smoothing
Definition
filtermorpho.h:210
pappso::TraceDetectionInterface
Definition
tracedetectioninterface.h:44
pappso::TraceDetectionMoulon
Definition
tracedetectionmoulon.h:35
pappso::TraceDetectionMoulon::m_xicFilterSmoothing
FilterMorphoMean m_xicFilterSmoothing
Definition
tracedetectionmoulon.h:37
pappso::TraceDetectionMoulon::m_ticStop
pappso_double m_ticStop
Definition
tracedetectionmoulon.h:39
pappso::TraceDetectionMoulon::m_ticStart
pappso_double m_ticStart
Definition
tracedetectionmoulon.h:38
pappso::TraceDetectionSinkInterface
Definition
tracedetectioninterface.h:38
pappso::Trace
A simple container of DataPoint instances.
Definition
trace.h:148
PMSPP_LIB_DECL
#define PMSPP_LIB_DECL
Definition
exportinmportconfig.h:14
pappso
tries to keep as much as possible monoisotopes, removing any possible C13 peaks and changes multichar...
Definition
aa.cpp:39
pappso::pappso_double
double pappso_double
A type definition for doubles.
Definition
types.h:50
tracedetectioninterface.h
pappsomspp
processing
detection
tracedetectionmoulon.h
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