106 Peptide(
const QString &pepstr);
130 void addAaModification(
AaModificationP aaModification,
unsigned int position);
139 std::vector<Aa>::iterator begin();
141 std::vector<Aa>::iterator end();
143 std::vector<Aa>::const_iterator begin()
const;
145 std::vector<Aa>::const_iterator end()
const;
147 std::vector<Aa>::const_reverse_iterator rbegin()
const;
149 std::vector<Aa>::const_reverse_iterator rend()
const;
151 Aa &getAa(
unsigned int position);
152 const Aa &getConstAa(
unsigned int position)
const;
159 virtual int getNumberOfIsotope(
Isotope isotope)
const override;
162 const QString getSequence()
const override;
163 unsigned int size()
const override;
177 const std::vector<char> &aa_list)
const;
194 std::vector<unsigned int>
202 std::vector<unsigned int>
204 const std::vector<char> &aa_list)
const;
209 std::vector<unsigned int> getAaPositionList(
char aa)
const;
210 std::vector<unsigned int> getAaPositionList(std::list<char> list_aa)
const;
213 const QString toString()
const;
215 const QString toAbsoluteString()
const;
218 const QString getLiAbsoluteString()
const;
222 void removeInternalNterModification();
223 void removeInternalCterModification();
233 virtual bool isPalindrome()
const override;
234 void replaceLeucineIsoleucine();
235 void removeNterAminoAcid();
236 void removeCterAminoAcid();